{"batchcomplete":"","continue":{"lecontinue":"20260619115450|185","continue":"-||"},"query":{"logevents":[{"logid":195,"ns":0,"title":"STM:Collective Variables","pageid":203,"logpage":203,"revid":746,"params":{},"type":"create","action":"create","user":"Kulhanek","timestamp":"2026-06-20T13:29:51Z","comment":"Created page with \"Navigation: [[Documentation]] / [[Methods]] / [[String Method]] / [[STM:Client]] / [[STM:Collective Variables]] ---- __NOEDITSECTION__ __NOTOC__ Each collective variable used in a string method simulation is specified in a separate [CV] section. These sections are placed either in a special group, {STM} by default, when the collective variables are defined in the main control file, or in the {MAIN} group of a separate file. The name of the group or the file is controlled...\""},{"logid":194,"ns":0,"title":"ABP:Collective Variables","pageid":202,"logpage":202,"revid":740,"params":{},"type":"create","action":"create","user":"Kulhanek","timestamp":"2026-06-20T13:21:05Z","comment":"Created page with \"Navigation: [[Documentation]] / [[Methods]] / [[Constrained Dynamics]] / [[CST:Constraints]] __NOEDITSECTION__ __NOTOC__ ---- Each collective variable employed by the Adaptive Biasing Potential (ABP) method is provided in a separate [CV] section. These sections are placed either in a special group, {ABP} by default, when the collective variables are defined in the main control file, or in the {MAIN} group of a separate file. The name of the group or the file is controlle...\""},{"logid":193,"ns":0,"title":"ABP:Files","pageid":201,"logpage":201,"revid":737,"params":{},"type":"create","action":"create","user":"Kulhanek","timestamp":"2026-06-20T07:52:54Z","comment":"Created page with \"Navigation: [[Documentation]] / [[Methods]] / [[Constrained Dynamics]] / [[ABP:Files]] ----\""},{"logid":192,"ns":0,"title":"ABP:Examples","pageid":200,"logpage":200,"revid":736,"params":{},"type":"create","action":"create","user":"Kulhanek","timestamp":"2026-06-20T07:52:25Z","comment":"Created page with \"Navigation: [[Documentation]] / [[Methods]] / [[Constrained Dynamics]] / [[ABP:Examples]] ----\""},{"logid":191,"ns":0,"title":"ABP:Controls","pageid":199,"logpage":199,"revid":730,"params":{},"type":"create","action":"create","user":"Kulhanek","timestamp":"2026-06-20T07:39:05Z","comment":"Created page with \"## Navigation: [[Documentation]] / [[Methods]] / [[Adaptive Biasing Potential]] / [[ABP:Controls]]  **NOEDITSECTION** **NOTOC**  The behaviour of the Adaptive Biasing Potential (ABP) method is controlled by the setup provided in the [abp] section. This section belongs to the {PMFLIB} group. The ABP method implemented in PMFLib calculates the mollified free energy from a smoothed population of selected collective variables. The obtained free-energy surface is therefore no...\""},{"logid":190,"ns":0,"title":"ABP:Utilities","pageid":198,"logpage":198,"revid":727,"params":{},"type":"create","action":"create","user":"Kulhanek","timestamp":"2026-06-20T07:30:27Z","comment":"Created page with \"Navigation: [[Documentation]] / [[Methods]] / [[Constrained Dynamics]] / [[ABP:Utilities]] __NOEDITSECTION__ ---- The CST data can be processed by the following utilities. * CST accumulator processing (only if <i>freadranges</i> is <i>on</i>). ** [[accu-info]] ** [[accu-combine]] ** [[accu-trajectory]] * The free energy, internal energy, entropic contribution and other data: ** [[pmf-integrate]]\""},{"logid":189,"ns":0,"title":"CST:Files","pageid":197,"logpage":197,"revid":721,"params":{},"type":"create","action":"create","user":"Kulhanek","timestamp":"2026-06-20T07:01:59Z","comment":"Created page with \"Navigation: [[Documentation]] / [[Methods]] / [[Constrained Dynamics]] / [[CST:Files]] ----\""},{"logid":188,"ns":0,"title":"MON:Examples","pageid":196,"logpage":196,"revid":719,"params":{},"type":"create","action":"create","user":"Kulhanek","timestamp":"2026-06-19T13:50:51Z","comment":"Created page with \"Navigation: [[Documentation]] / [[Methods]] / [[Collective Variable Monitoring]] / [[MON:Examples]] ----\""},{"logid":187,"ns":0,"title":"PDRV:Examples","pageid":195,"logpage":195,"revid":718,"params":{},"type":"create","action":"create","user":"Kulhanek","timestamp":"2026-06-19T13:50:17Z","comment":"Created page with \"Navigation: [[Documentation]] / [[Methods]] / [[Path Driving]] / [[PDRV:Examples]] ----\""},{"logid":186,"ns":0,"title":"Metric Tensor Analysis","pageid":194,"logpage":194,"revid":693,"params":{},"type":"create","action":"create","user":"Kulhanek","timestamp":"2026-06-19T12:11:28Z","comment":"Created page with \"Navigation: [[Documentation]] / [[Methods]] / [[Metric Tensor Analysis]]\""}]}}