Nucleic Acids: Difference between revisions
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{{CVS}}__NOEDITSECTION__ | {{CVS}}__NOEDITSECTION__ | ||
= Implemented Collective Variables = | |||
{| | {| | ||
| | | style="width: 5em;" | '''Type''' | ||
| NASBPP | | '''Description''' | ||
| simple base pair parameters | |- | ||
| NABEND | | [[CV:NASBPP|NASBPP]] | ||
| nucleic acid bending | | simple base pair parameters | ||
NAPBO | |- | ||
NASBO | | [[CV:NABEND|NABEND]] | ||
| nucleic acid bending | |||
|- | |||
| [[CV:NAPBO|NAPBO]] | |||
| primitive base opening | |||
|- | |||
| [[CV:NASBO|NASBO]] | |||
| simple base opening | |||
|} | |||
== Simple Base Pair Parameters == | |||
All simple base pair parameters fully compatible with 3DNA are available via [[CV:NASBPP|NASBPP]]. Reference coordinates for nucleobase rings are available here: | |||
{| | |||
| style="width: 5em;" | Nucleobase | |||
| ''anti'' | |||
| ''syn'' | |||
|- | |||
| A | |||
| | |||
| | |||
|- | |||
| G | |||
| | |||
| | |||
|- | |||
| C | |||
| | |||
| | |||
|- | |||
| T | |||
| | |||
| | |||
|- | |||
| | |||
| | |||
|} | |||
===References=== | ===References=== | ||
*cite the article | *cite the article | ||
Revision as of 16:05, 12 February 2019
Navigation: Documentation / Collective Variables / Nucleic Acids
Distance
Angle
Coordination
Shape
Special
Energy
Algebra
Implemented Collective Variables
| Type | Description |
| NASBPP | simple base pair parameters |
| NABEND | nucleic acid bending |
| NAPBO | primitive base opening |
| NASBO | simple base opening |
Simple Base Pair Parameters
All simple base pair parameters fully compatible with 3DNA are available via NASBPP. Reference coordinates for nucleobase rings are available here:
| Nucleobase | anti | syn |
| A | ||
| G | ||
| C | ||
| T | ||
References
- cite the article