ABF:Collective variables: Difference between revisions

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| [[Control key types|string]]
| [[Control key types|string]]
| The name of collective variable from the list of general collective variables. For details, see: [[Collective variables]]. The CV cannot be a member of [[managed path]].
| The name of collective variable from the list of general collective variables. For details, see: [[Collective Variables| Collective variables]]. The CV cannot be a member of [[managed path]].
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| '''min_value'''
| '''min_value'''

Revision as of 14:31, 1 April 2016

Navigation: Documentation / Methods / Adaptive Biasing Force Method / ABF:Collective variables


Each collective variable used in the ABF simulation is provided in a separate section [CV]. All these sections are included either in the special group if the collective variables are provided in the main control file or in the {MAIN} group of separate file. The name of the group or the file name is controlled be the fabfdef option provided in the [file] section.

[CV]

Key Default value Type Description
name string The name of collective variable from the list of general collective variables. For details, see: Collective variables. The CV cannot be a member of managed path.
min_value real Minimal value used in the colective variable discretization.
max_value real Maximum value used in the colective variable discretization.
nbins integer Number of bins used to discretize the collective variable.
maxforce 0 real Maximum absolute value of allowed force to be used to bias the simulation. If the force overcomes this limit it is set to zero. This filter is not applied if the requested maxforce is zero.
switch 0 real Switching interval from the min and max values of the collective variable. In this interval, the biasing force is switched from its estimated value towards zero at the boundaries. This filter is not applied if the requested switch interval is zero.

Keys in bold are mandatory.