Nucleic Acids: Difference between revisions
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== Simple Base Pair Parameters == | == Simple Base Pair Parameters == | ||
All simple base pair parameters fully compatible with 3DNA are available via [[CV:NASBPP|NASBPP]]. Reference coordinates for nucleobase rings are available here: | All simple base pair parameters (''i.e.'', shear, stretch, stagger, buckle, propeller, opening) fully compatible with 3DNA are available via [[CV:NASBPP|NASBPP]]. | ||
[[File:SF3.png|center|600px]] | |||
Reference coordinates for nucleobase rings are available here: | |||
{| | {| | ||
| style="width: 5em;" | Nucleobase | | style="width: 5em;" | Nucleobase | ||
Revision as of 16:22, 12 February 2019
Navigation: Documentation / Collective Variables / Nucleic Acids
Distance
Angle
Coordination
Shape
Special
Energy
Algebra
Implemented Collective Variables
| Type | Description |
| NASBPP | simple base pair parameters |
| NABEND | nucleic acid bending |
| NAPBO | primitive base opening |
| NASBO | simple base opening |
Simple Base Pair Parameters
All simple base pair parameters (i.e., shear, stretch, stagger, buckle, propeller, opening) fully compatible with 3DNA are available via NASBPP.
Reference coordinates for nucleobase rings are available here:
| Nucleobase | anti | syn |
| A | ||
| G | ||
| C | ||
| T | ||
References
- cite the article