Ring Puckering: Difference between revisions

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Navigation: [[Documentation]] / [[Collective Variables]] / [[Ring Puckering]]  
Navigation: [[Documentation]] / [[Collective Variables]] / [[RIng Puckering]]  
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= Collective Variables For Ring Puckering =


{|
{|
| style="width: 5em;" | '''Type'''
| '''Description'''
|-
| [[CV:PUCK6Q|PUCK6Q]]
| [[CV:PUCK6Q|PUCK6Q]]
| total puckering amplitude of six-membered ring
| total puckering amplitude of six-membered ring
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|}
|}


* Six-membered Ring
** PUCK6Q
** PUCK6P - p is phi
** PUCK6T - t is theta


[[File:Puckering.png|800px|center|ring puckering parameters for six-membered ring]]
[[File:Puckering.png|800px|center|ring puckering parameters for six-membered ring]]
Legend
* Five-membered Ring
** PUCK5Q
** PUCK5P- p is phi


===References===
===References===
*cite the article
*cite the article

Revision as of 18:11, 12 February 2019

Navigation: Documentation / Collective Variables / RIng Puckering


Distance

Angle

Coordination

Shape

Nucleic Acids

Puckering

Special

Energy

Algebra

Collective Variables For Ring Puckering

Type Description
PUCK6Q total puckering amplitude of six-membered ring
PUCK6P puckering azimuthal angle of six-membered ring
PUCK6T puckering polar angle of six-membered ring
PUCK5Q total puckering amplitude of five-membered ring
PUCK5P puckering azimuthal angle of five-membered ring


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ring puckering parameters for six-membered ring

References

  • cite the article