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===Research | ===Research employing PMFLib=== | ||
# Tomecek, J.; Cablova, A.; Hromadkova, A.; Novotny, J.; Marek, R.; Durnik, I.; Kulhanek, P.; Pruckova, Z.; Rouchal, M.; Dastychova, L.; Vicha, R. Modes of Micromolar Host-Guest Binding of Beta-Cyclodextrin Complexes Revealed by NMR Spectroscopy in Salt Water. ''J. Org. Chem.'' '''2021''', ''86 (6)'', 4483–4496. [https://doi.org/10.1021/acs.joc.0c02917 doi:10.1021/acs.joc.0c02917]. | |||
# Kulkarni, S. G.; Jelinkova, K.; Necas, M.; Pruckova, Z.; Rouchal, M.; Dastychova, L.; Kulhanek, P.; Vicha, R. A Photochemical/Thermal Switch Based on 4,4 ’-Bis(Benzimidazolio)Stilbene: Synthesis and Supramolecular Properties. ''ChemPhysChem'' '''2020''', ''21 (18)'', 2084–2095. [https://doi.org/10.1002/cphc.202000472 doi:10.1002/cphc.202000472]. | |||
# Bouchal, T.; Durník, I.; Illík, V.; Réblová, K.; Kulhánek, P. Importance of Base-Pair Opening for Mismatch Recognition. ''Nucleic Acids Res.'' '''2020''', ''48 (20)'', 11322–11334. [https://doi.org/10.1093/nar/gkaa896 doi:10.1093/nar/gkaa896]. | |||
# Ruzicka, M.; Soucek, R.; Kulhanek, P.; Radova, L.; Fajkusova, L.; Reblova, K. Bending of DNA Duplexes with Mutation Motifs. ''DNA Res.'' '''2019''', ''26 (4)'', 341–352. [https://doi.org/10.1093/dnares/dsz013 doi:10.1093/dnares/dsz013]. | |||
# Stepan, J.; Kabelka, I.; Koca, J.; Kulhanek, P. Behavior of BsoBI Endonuclease in the Presence and Absence of DNA. ''J. Mol. Model.'' '''2018''', ''24'' (1), 22. [https://doi.org/10.1007/s00894-017-3557-8 doi:10.1007/s00894-017-3557-8]. | # Stepan, J.; Kabelka, I.; Koca, J.; Kulhanek, P. Behavior of BsoBI Endonuclease in the Presence and Absence of DNA. ''J. Mol. Model.'' '''2018''', ''24'' (1), 22. [https://doi.org/10.1007/s00894-017-3557-8 doi:10.1007/s00894-017-3557-8]. | ||
# Ruzicka, M.; Kulhanek, P.; Radova, L.; Cechova, A.; Spackova, N.; Fajkusova, L.; Reblova, K. DNA Mutation Motifs in the Genes Associated with Inherited Diseases. ''PLoS One'' '''2017''', ''12'' (8), e0182377. [https://doi.org/10.1371/journal.pone.0182377 doi:10.1371/journal.pone.0182377]. | # Ruzicka, M.; Kulhanek, P.; Radova, L.; Cechova, A.; Spackova, N.; Fajkusova, L.; Reblova, K. DNA Mutation Motifs in the Genes Associated with Inherited Diseases. ''PLoS One'' '''2017''', ''12'' (8), e0182377. [https://doi.org/10.1371/journal.pone.0182377 doi:10.1371/journal.pone.0182377]. | ||
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# Novotny, J.; Kulhanek, P.; Marek, R. Biocompatible Xanthine-Quadruplex Scaffold for Ion-Transporting DNA Channels. ''J. Phys. Chem. Lett.'' '''2012''', ''3'' (13), 1788?1792. [https://doi.org/10.1021/jz300559w doi:10.1021/jz300559w]. | # Novotny, J.; Kulhanek, P.; Marek, R. Biocompatible Xanthine-Quadruplex Scaffold for Ion-Transporting DNA Channels. ''J. Phys. Chem. Lett.'' '''2012''', ''3'' (13), 1788?1792. [https://doi.org/10.1021/jz300559w doi:10.1021/jz300559w]. | ||
# Mones, L.; Kulhanek, P.; Simon, I.; Laio, A.; Fuxreiter, M. The Energy Gap as a Universal Reaction Coordinate for the Simulation of Chemical Reactions. ''J. Phys. Chem. B'' '''2009''', ''113'' (22), 7867-7873. [https://doi.org/10.1021/jp9000576 doi:10.1021/jp9000576]. | # Mones, L.; Kulhanek, P.; Simon, I.; Laio, A.; Fuxreiter, M. The Energy Gap as a Universal Reaction Coordinate for the Simulation of Chemical Reactions. ''J. Phys. Chem. B'' '''2009''', ''113'' (22), 7867-7873. [https://doi.org/10.1021/jp9000576 doi:10.1021/jp9000576]. | ||
Revision as of 13:29, 21 July 2021
Navigation: Documentation / References
Research employing PMFLib
- Tomecek, J.; Cablova, A.; Hromadkova, A.; Novotny, J.; Marek, R.; Durnik, I.; Kulhanek, P.; Pruckova, Z.; Rouchal, M.; Dastychova, L.; Vicha, R. Modes of Micromolar Host-Guest Binding of Beta-Cyclodextrin Complexes Revealed by NMR Spectroscopy in Salt Water. J. Org. Chem. 2021, 86 (6), 4483–4496. doi:10.1021/acs.joc.0c02917.
- Kulkarni, S. G.; Jelinkova, K.; Necas, M.; Pruckova, Z.; Rouchal, M.; Dastychova, L.; Kulhanek, P.; Vicha, R. A Photochemical/Thermal Switch Based on 4,4 ’-Bis(Benzimidazolio)Stilbene: Synthesis and Supramolecular Properties. ChemPhysChem 2020, 21 (18), 2084–2095. doi:10.1002/cphc.202000472.
- Bouchal, T.; Durník, I.; Illík, V.; Réblová, K.; Kulhánek, P. Importance of Base-Pair Opening for Mismatch Recognition. Nucleic Acids Res. 2020, 48 (20), 11322–11334. doi:10.1093/nar/gkaa896.
- Ruzicka, M.; Soucek, R.; Kulhanek, P.; Radova, L.; Fajkusova, L.; Reblova, K. Bending of DNA Duplexes with Mutation Motifs. DNA Res. 2019, 26 (4), 341–352. doi:10.1093/dnares/dsz013.
- Stepan, J.; Kabelka, I.; Koca, J.; Kulhanek, P. Behavior of BsoBI Endonuclease in the Presence and Absence of DNA. J. Mol. Model. 2018, 24 (1), 22. doi:10.1007/s00894-017-3557-8.
- Ruzicka, M.; Kulhanek, P.; Radova, L.; Cechova, A.; Spackova, N.; Fajkusova, L.; Reblova, K. DNA Mutation Motifs in the Genes Associated with Inherited Diseases. PLoS One 2017, 12 (8), e0182377. doi:10.1371/journal.pone.0182377.
- Kumari, M.; Kozmon, S.; Kulhanek, P.; Stepan, J.; Tvarozka, I.; Koca, J. Exploring Reaction Pathways for O-GlcNAc Transferase Catalysis. A String Method Study. J. Phys. Chem. B 2015, 119 (12), 4371-4381. doi:10.1021/jp511235f.
- Novotny, J.; Kulhanek, P.; Marek, R. Biocompatible Xanthine-Quadruplex Scaffold for Ion-Transporting DNA Channels. J. Phys. Chem. Lett. 2012, 3 (13), 1788?1792. doi:10.1021/jz300559w.
- Mones, L.; Kulhanek, P.; Simon, I.; Laio, A.; Fuxreiter, M. The Energy Gap as a Universal Reaction Coordinate for the Simulation of Chemical Reactions. J. Phys. Chem. B 2009, 113 (22), 7867-7873. doi:10.1021/jp9000576.