ABF:Collective variables: Difference between revisions

From PMFLib Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
 
Line 31: Line 31:
| Number of bins used for discretizing the collective variable.
| Number of bins used for discretizing the collective variable.
|- style="vertical-align: top; background-color: #f6f6f6;"
|- style="vertical-align: top; background-color: #f6f6f6;"
| '''wfac'''
| wfac
| 0
| 0
| [[Control key types|real]]
| [[Control key types|real]]

Latest revision as of 07:11, 28 May 2025

Navigation: Documentation / Methods / Adaptive Biasing Force Method / ABF:Collective variables


Each collective variable used in an ABF simulation is defined in a separate section [CV]. These sections are included either in a special group (if the collective variables are defined directly in the main control file), or in the {MAIN} group of a separate file. The group name or file name is determined by the `fabfdef` option specified in the [file] section.

[CV]

Key Default value Type Description
name string Name of the collective variable, selected from the general list of collective variables. For more information, see Collective variables. This variable cannot be part of a managed path.
min_value real Minimum value used for discretizing the collective variable.
max_value real Maximum value used for discretizing the collective variable.
nbins integer Number of bins used for discretizing the collective variable.
wfac 0 real Width factor for Gaussian kernel smoothing, given as a multiplier of the bin width.

Keys in bold are mandatory.