CV:NABO

Navigation: Documentation / Collective Variables / CV:DD

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Distance

DD, DIS, MDIS, MDISG, ODIS, OPOS, OPOS2, ORAD, ORAD2, POS, RAD

Angle

ANG, ANG2, AXANG, AXANG2, DIH, DIH2, PANG, PVANG

Coordination

CNFF, CNGFF, CNSW, CNGSW, CNRF, CNGRF

Shape

ACYL, ASPH, EVEC, PMGTD, PMOGT, PLANE, RGYR, RMSDT, SANIS

Nucleic Acids

NALBPP, NASBPP, NASBPPOLD, NALSTP, NASSTP, NASSTPOLD, NASBO, NAPBO, NABEND

Puckering

PUCK6Q, PUCK6P, PUCK6T, PUCK5Q, PUCK5P

Special

WORMPOS, WORMANG

Energy

POT, EGAP

Algebra

ADD, SUB, MULT, DIV, FSWITCH, RSWITCH

Specification

Section name: NABO

Key	Type	Default	Description
name	string		unique CV name
group_a	mask		atoms specifying the point A
group_b	mask		atoms specifying the point B
group_c	mask		atoms specifying the point C
group_d	mask		atoms specifying the point D
group_e	mask		atoms specifying the point E
group_f	mask		atoms specifying the point F

Keys in bold are mandatory.