Nucleic Acids: Difference between revisions
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== Simple Base Pair Parameters == | == Simple Base Pair Parameters == | ||
All simple base pair parameters (''i.e.'', shear, stretch, stagger, buckle, propeller, opening) fully compatible with 3DNA are available via [[CV:NASBPP|NASBPP]]. | All simple base pair parameters (''i.e.'', shear, stretch, stagger, buckle, propeller, opening) fully compatible with 3DNA are available via the [[CV:NASBPP|NASBPP]] collective variable. The collective variable [[CV:NASBPP|NASBO]] implements only the opening parameter and thus it should be a little bit computationally faster. | ||
[[File:SF3.png|center|600px]] | [[File:SF3.png|center|600px]] | ||
Reference coordinates for nucleobase rings are | Reference coordinates for nucleobase rings are provided in the following table: | ||
{| | {| | ||
| style="width: 5em;" | Nucleobase | | style="width: 5em;" | Nucleobase | ||