ABP:Collective Variables

From PMFLib Wiki
Jump to navigation Jump to search

Navigation: Documentation / Methods / Adaptive Biasing Potential Method / ABP:Collective Variables


Each collective variable employed by the Adaptive Biasing Potential (ABP) method is provided in a separate [CV] section. These sections are placed either in a special group, {ABP} by default, when the collective variables are defined in the main control file, or in the {MAIN} group of a separate file. The name of the group or the file is controlled by the fabpdef option in the [files] section.

[CV]

Key Default value Type Description
name string The name of a collective variable from the list of general collective variables. For details, see Collective variables.
min_value real The minimum value of the CV range. The value is specified in the natural unit of the selected collective variable and is internally converted to PMFLib internal units. This key is mandatory.
max_value real The maximum value of the CV range. The value is specified in the natural unit of the selected collective variable and is internally converted to PMFLib internal units. This key is mandatory, and its value must be greater than min_value.
nbins integer The number of bins used to discretise the CV range between min_value and max_value. This key is mandatory, and its value must be greater than zero.
width real The width of the Gaussian mollifier used to smooth the population along this collective variable. The value is specified in the natural unit of the selected collective variable and is internally converted to PMFLib internal units. This key is mandatory, and its value must be greater than zero.

Keys in bold are mandatory.

NOTE: A collective variable employed by the ABP method cannot be controlled by a managed path operating in driven mode.