CV:NASBO: Difference between revisions
Jump to navigation
Jump to search
no edit summary
(Created page with "__NOEDITSECTION__ Navigation: Documentation / Collective Variables / Nucleic Acids / CV:NASBO ---- {{CVS}} ===Definition=== The simple base pair opening for th...") |
No edit summary |
||
| Line 6: | Line 6: | ||
The simple base pair opening for the A:B base pair. This is an earlier implementation providing only opening, full set of simple base pair parameters is availble via [[CV:NASPP]]. | The simple base pair opening for the A:B base pair. This is an earlier implementation providing only opening, full set of simple base pair parameters is availble via [[CV:NASPP]]. | ||
'''IMPORTANT:''' It is critical that the A and B bases are not separated during simulation due to imaging of DNA chains into the simulation box. Use | '''IMPORTANT:''' It is critical that the A and B bases are not separated during simulation due to imaging of DNA chains into the simulation box. Use ether topjoinmol from CATs to merge both chains into a single molecule or use the correct value of iwrap in sander or pmemd. | ||
===Specification=== | ===Specification=== | ||