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# Ruzicka, M.; Soucek, R.; Kulhanek, P.; Radova, L.; Fajkusova, L.; Reblova, K. Bending of DNA Duplexes with Mutation Motifs. ''DNA Res.'' '''2019''', ''26 (4)'', 341–352. [https://doi.org/10.1093/dnares/dsz013 doi:10.1093/dnares/dsz013]. | # Ruzicka, M.; Soucek, R.; Kulhanek, P.; Radova, L.; Fajkusova, L.; Reblova, K. Bending of DNA Duplexes with Mutation Motifs. ''DNA Res.'' '''2019''', ''26 (4)'', 341–352. [https://doi.org/10.1093/dnares/dsz013 doi:10.1093/dnares/dsz013]. | ||
# Stepan, J.; Kabelka, I.; Koca, J.; Kulhanek, P. Behavior of BsoBI Endonuclease in the Presence and Absence of DNA. ''J. Mol. Model.'' '''2018''', ''24'' (1), 22. [https://doi.org/10.1007/s00894-017-3557-8 doi:10.1007/s00894-017-3557-8]. | # Stepan, J.; Kabelka, I.; Koca, J.; Kulhanek, P. Behavior of BsoBI Endonuclease in the Presence and Absence of DNA. ''J. Mol. Model.'' '''2018''', ''24'' (1), 22. [https://doi.org/10.1007/s00894-017-3557-8 doi:10.1007/s00894-017-3557-8]. | ||
# Spackova, N.; Reblova, K. Role of Inosine-Uracil Base Pairs in the Canonical RNA Duplexes. ''Genes'' '''2018''', ''9 (7)'', 324. [https://doi.org/10.3390/genes9070324 doi:10.3390/genes9070324]. | |||
# Ruzicka, M.; Kulhanek, P.; Radova, L.; Cechova, A.; Spackova, N.; Fajkusova, L.; Reblova, K. DNA Mutation Motifs in the Genes Associated with Inherited Diseases. ''PLoS One'' '''2017''', ''12'' (8), e0182377. [https://doi.org/10.1371/journal.pone.0182377 doi:10.1371/journal.pone.0182377]. | # Ruzicka, M.; Kulhanek, P.; Radova, L.; Cechova, A.; Spackova, N.; Fajkusova, L.; Reblova, K. DNA Mutation Motifs in the Genes Associated with Inherited Diseases. ''PLoS One'' '''2017''', ''12'' (8), e0182377. [https://doi.org/10.1371/journal.pone.0182377 doi:10.1371/journal.pone.0182377]. | ||
# Janoš, P.; Trnka, T.; Kozmon, S.; Tvaroška, I.; Koča, J. Different QM/MM Approaches To Elucidate Enzymatic Reactions: Case Study on PpGalNAcT2. ''J. Chem. Theory Comput.'' '''2016''', ''12 (12)'', 6062–6076. [https://doi.org/10.1021/acs.jctc.6b00531 doi:10.1021/acs.jctc.6b00531]. | |||
# Kumari, M.; Kozmon, S.; Kulhanek, P.; Stepan, J.; Tvarozka, I.; Koca, J. Exploring Reaction Pathways for O-GlcNAc Transferase Catalysis. A String Method Study. ''J. Phys. Chem. B'' '''2015''', ''119'' (12), 4371-4381. [https://doi.org/10.1021/jp511235f doi:10.1021/jp511235f]. | # Kumari, M.; Kozmon, S.; Kulhanek, P.; Stepan, J.; Tvarozka, I.; Koca, J. Exploring Reaction Pathways for O-GlcNAc Transferase Catalysis. A String Method Study. ''J. Phys. Chem. B'' '''2015''', ''119'' (12), 4371-4381. [https://doi.org/10.1021/jp511235f doi:10.1021/jp511235f]. | ||
# Novotny, J.; Kulhanek, P.; Marek, R. Biocompatible Xanthine-Quadruplex Scaffold for Ion-Transporting DNA Channels. ''J. Phys. Chem. Lett.'' '''2012''', ''3'' (13), 1788?1792. [https://doi.org/10.1021/jz300559w doi:10.1021/jz300559w]. | # Novotny, J.; Kulhanek, P.; Marek, R. Biocompatible Xanthine-Quadruplex Scaffold for Ion-Transporting DNA Channels. ''J. Phys. Chem. Lett.'' '''2012''', ''3'' (13), 1788?1792. [https://doi.org/10.1021/jz300559w doi:10.1021/jz300559w]. | ||
# Mones, L.; Kulhanek, P.; Simon, I.; Laio, A.; Fuxreiter, M. The Energy Gap as a Universal Reaction Coordinate for the Simulation of Chemical Reactions. ''J. Phys. Chem. B'' '''2009''', ''113'' (22), 7867-7873. [https://doi.org/10.1021/jp9000576 doi:10.1021/jp9000576]. | # Mones, L.; Kulhanek, P.; Simon, I.; Laio, A.; Fuxreiter, M. The Energy Gap as a Universal Reaction Coordinate for the Simulation of Chemical Reactions. ''J. Phys. Chem. B'' '''2009''', ''113'' (22), 7867-7873. [https://doi.org/10.1021/jp9000576 doi:10.1021/jp9000576]. | ||